rs6355515 SNP Detail

Summary

• ID
  rs6355515
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85872510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTGTATAA GTCAATGCAC
  AGACCAGCAA AAGCTTGGAG AATTGCCACG AATTGATTAT CTTTGAGTAG TGACATTAAG
  GTTAAGCGTT TTCCCTAAAC GTTTCTATTT TCTCTATAAC GAACATGAAA CTTTTTCTCT
  ATGGAAAGTG TTTGAAGTTA GAAGCCTGGG AATTGGAGAT TTCCTAATTT TATGTGTCTA
  M
  TTGATATCCG GATTAAAATG TGTGATTAAA AAAAAAAGTA CCAATAATTA GAGTATTTGA
  CTTCCCCTTT CCCCGGCCAT TTATGTGATC CCTGCTGAGG AGAAATATTT TCACCACCCT
  TTTATTAATA GTTCGGGTGA TTTGGTTTTC CTAGAAACAT AACAGCTTAT TCTGTTTGCT
  TGTGGTAGAG TCTGTATAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8761592	WI_WGS_12_80527099	WI	MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6355515					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85872510 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	386 bp distal
Erg28	ergosterol biosynthesis 28	1186 bp upstream
Rr265708	regulatory region 265708	within coordinates
Tssr114435	transcription start site region 114435	1088 bp downstream
Tssr114436	transcription start site region 114436	727 bp downstream
Tssr117107	transcription start site region 117107	1231 bp upstream
Tssr117108	transcription start site region 117108	1181 bp upstream
Tssr117109	transcription start site region 117109	1167 bp upstream
Tssr117110	transcription start site region 117110	847 bp upstream
Ttll5	tubulin tyrosine ligase-like family, member 5	within coordinates