rs6355705 SNP Detail

Summary

• ID
  rs6355705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:60165573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCACTGT TTGACACAGA
  TTACGCTTAT GGTACAGAAG ACACCCCCAA GCTGCTGAGG TCACAGACTT ACCCTATAAT
  ATACTCAGTC ACAACATATG TGTCTTAAAA TTTATAGATA TACGCATGAA TGCATAGATT
  TGTTCTATGT TGTGCAGAGT TACCTTATTA CACTTTATAA TACAAATAAT CACCTCCTAT
  Y
  GTGCAGATAT ATAGTATATA TATTAACTCT ACTTTGCATC ATAGAGGGCA GACATGCTTT
  ATCATATCAT TGAGCTACAA TTCTGGCCTA CAGCAGAGAT ACAGCCTGGT ATCCATTAAG
  AGCAAGGCCT CTGGACCCAG GCTTCCTGGG CTTGCCTCCT GATCCCATCT TTTACTAATT
  GTATCGCCAC AGGTAAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8761782	WI_WGS_X_44217815	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6355705					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:60165573 () rs orientation: forward

Symbol	Name	Function Class
Cdr1os	cerebellar degeneration related antigen 1, opposite strand	within coordinates
Gm53013	predicted gene, 53013	within coordinates
Tssr5626	transcription start site region 5626	1575 bp upstream
Tssr161069	transcription start site region 161069	1657 bp downstream
Tssr161070	transcription start site region 161070	1468 bp downstream
Tssr161071	transcription start site region 161071	1444 bp downstream
Tssr161072	transcription start site region 161072	1124 bp downstream