rs6355871 SNP Detail

Summary

• ID
  rs6355871
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85872538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGCTTGG AGAATTGCCA
  CGAATTGATT ATCTTTGAGT AGTGACATTA AGGTTAAGCG TTTTCCCTAA ACGTTTCTAT
  TTTCTCTATA ACGAACATGA AACTTTTTCT CTATGGAAAG TGTTTGAAGT TAGAAGCCTG
  GGAATTGGAG ATTTCCTAAT TTTATGTGTC TACTTGATAT CCGGATTAAA ATGTGTGATT
  W
  AAAAAAAAAG TACCAATAAT TAGAGTATTT GACTTCCCCT TTCCCCGGCC ATTTATGTGA
  TCCCTGCTGA GGAGAAATAT TTTCACCACC CTTTTATTAA TAGTTCGGGT GATTTGGTTT
  TCCTAGAAAC ATAACAGCTT ATTCTGTTTG CTTGTGGTAG AGTCTGTATA AATATTGGCA
  AGGGTTTTGA ACCTTGGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8761948	WI_WGS_12_80527127	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6355871					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85872538 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	414 bp distal
Erg28	ergosterol biosynthesis 28	1214 bp upstream
Rr265708	regulatory region 265708	within coordinates
Tssr114435	transcription start site region 114435	1116 bp downstream
Tssr114436	transcription start site region 114436	755 bp downstream
Tssr117107	transcription start site region 117107	1259 bp upstream
Tssr117108	transcription start site region 117108	1209 bp upstream
Tssr117109	transcription start site region 117109	1195 bp upstream
Tssr117110	transcription start site region 117110	875 bp upstream
Ttll5	tubulin tyrosine ligase-like family, member 5	within coordinates