rs6355929 SNP Detail

Summary

• ID
  rs6355929
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85872578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACAGACCAGC
  AAAAGCTTGG AGAATTGCCA CGAATTGATT ATCTTTGAGT AGTGACATTA NGGTTAAGCG
  TTTTCCCTAA ACGTTTCTAT TTTCTCTATA ACGAACATGA AACTTTTTCT CTATGGAAAG
  TGTTTGAAGT TAGAAGCCTG GGAATTGGAG ATTTCCTAAT TTTATGTGTC TANTTGATAT
  CCGGATTAAA ATGTGTGATT NAAAAAAAAA GTACCAATAA TTAGAGTATT TGACTTCCCC
  W
  TTCCCCGGCC ATTTATGTGA TCCCTGCTGA GGAGAAATAT TTTCACCACC CTTTTATTAA
  TAGTTCGGGT GATTTGGTTT TCCTAGAAAC ATAACAGCTT ATTCTGTTTG CTTGTGGTAG
  AGTCTGTATA AATATTGGCA AGGGTTTTGA ACCTTGGATT TTTATTTTGA TCCTGGTCAG
  ATTTGTTTAG CAAAGAATTT TCTAAACATA GGCTTATCAA CTGTCCACAT CAGTGCCCTA
  AAGCCTCTCC                                                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8762006	WI_WGS_12_80527167	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6355929					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85872578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	454 bp distal
Erg28	ergosterol biosynthesis 28	1254 bp upstream
Rr265708	regulatory region 265708	within coordinates
Tssr114435	transcription start site region 114435	1156 bp downstream
Tssr114436	transcription start site region 114436	795 bp downstream
Tssr117107	transcription start site region 117107	1299 bp upstream
Tssr117108	transcription start site region 117108	1249 bp upstream
Tssr117109	transcription start site region 117109	1235 bp upstream
Tssr117110	transcription start site region 117110	915 bp upstream
Ttll5	tubulin tyrosine ligase-like family, member 5	within coordinates