rs6355951 SNP Detail

Summary

• ID
  rs6355951
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185017665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             GCTTGCCAGG AAAGCCTCCT GCTGCAAGCA CTGCTAATTG CTAATGATGT
  Y
  GGTCTTTTTC CTCTAATCCC ATTAAGTCTT TTGGGAGGGG GGTAGCTTGC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8762029	WI_WGS_1_186395848	WI	MOUSE	f	SNP							T		C
ss46729987	NES10647351	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	T	C	T		C		T	T	C		C	T	C	T		T
ss146426514	ENSMUSSNP4693663	ENSEMBL	ENSEMBL_Sanger	f	SNP		T								T
ss320174453	CHEV_1_187109347	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6355951					SNP	C	T	C	T	C	T	T	C	C	T	T	C	C	C	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46729987	NES10647351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185017665 () rs orientation: forward

Symbol	Name	Function Class
Iars2	isoleucine-tRNA synthetase 2, mitochondrial	1174 bp downstream
Rab3gap2	RAB3 GTPase activating protein subunit 2	within coordinates
Rr425360	regulatory region 425360	within coordinates