rs6357589 SNP Detail

Summary

• ID
  rs6357589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126909639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAAATAA ATCTTAAAGA
  AAAAAAAAAA TAGAGCCAAG TAAGTGTGGC TGCTGCCTGT AACCCTCTAG CACTGAGAGT
  GGAGACAGGG GTCTTCACTG CAAGTTGGCT AGCTAGTTTA GCCTGTTAGC CTGTTAGCAA
  GCTCTGGGCT TGCTGAGAGA CTCTGCCTCA ATAAACAAAT TGGAGAGCAG TCACCTCTGG
  R
  CTAACCCACA CAAAGGCACA CGTGTACATG TACTCCCATG CACACATCCT GTGAACGGTA
  GTTTTAGCTG TCTTGTCACA GTTTAGAATC ATTTGGGAAG AGGGTCTCCG TTGGATTGGG
  CTATGGGCCT GTCTTCATTA ATTAATATGG GAAGAAGCAG TCCACTGTGA GTGTCCCCAC
  TCCCTAGGCA GGAAGTCACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8763671	WI_WGS_10_127723938	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6357589					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126909639 () rs orientation: forward

Symbol	Name	Function Class
Agap2	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	1515 bp upstream
Rr213499	regulatory region 213499	1039 bp distal
Rr213500	regulatory region 213500	1162 bp proximal
Rr224393	regulatory region 224393	1361 bp proximal
Tssr96119	transcription start site region 96119	1495 bp upstream
Tssr96120	transcription start site region 96120	1559 bp upstream