rs6357601 SNP Detail

Summary

• ID
  rs6357601
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122872923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTAGAGA GCCAGTCAGA
  CAGTGCCAGC CCACCTGACG GGGTCTTGAT CAGGCTGAGG TGAACCCAAA GAATTACCGT
  TGTAACGTTA CTAGTCATGG TGTGACAGAT GAGCGCCCCA GCATTATGGG TGCACACGTG
  CATGTATCAT CCATGCATGT ATCAAGGTGC CCCATGCTGT CCAGCCCTTT GTCACTGACA
  W
  AGCAGCCAAT GAGATCAATT TACGAGAGAA AAGTCTTATT TGGCTCATGG TCTCAGAAGT
  TCAAGTCCAT GGTCTCGCTG TCTACCTTGT TGAGTTGGGT CGGTGACGAT GTTGCGTTGT
  GGCAATAGTT CATGGTAGAG AGAGCCTGGT CTTCTCATGG CTGCTGGGAA ACAGAGAGAG
  CCAGGAAAGG GCTAAGGGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8763683	WI_WGS_8_122217015	WI	MOUSE	f	SNP						T		A
ss47582917	NES11163810	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		A		T	T		A	T	A		A
ss322848703	CHEV_8_124670084	CHEVERUD	SCREENING_POP	f	SNP											A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6357601					SNP	T	T	T	T	T	T	A	A	T	T	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47582917	NES11163810	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122872923 () rs orientation: forward

Symbol	Name	Function Class
Gm39268	predicted gene, 39268	within coordinates
Gm56875	predicted gene, 56875	within coordinates
Rr179926	regulatory region 179926	278 bp proximal
Rr179927	regulatory region 179927	1278 bp proximal
Rr188324	regulatory region 188324	124 bp distal