rs6357791 SNP Detail

Summary

• ID
  rs6357791
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77865962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGCTCTAG AGAAGGGGGA
  GGTGGGAGCA TCCTCTCAGG CAAATGGGGG AATGGGGCGA AGAGCTTCTG GAGGGGGGGC
  TGGGGAGGGG AGCAGCATTT GGAATGTAAA TAAATAAAAC AACCTGAAGA AAGAACAGAT
  CCATCACTGA CAGGGAGGCA GTGTGTAGCT GTGAGTTCCG CAGATGCTTG GGGAGGTTGG
  R
  GGCTGCGCTC CAGTGTGCAG TGTGGCGGTC AGGACAGCCT GGAGGGTCTC CTGCCTCTGG
  TCATCTCGGG TCAGGCACCC ACTCTTAGCT AGTCCATGAA GTCTTAACCA GAGGAGCAGA
  GCAGGGAGAA GGCAACAGTG TGGTGTGCTG CCGTGTGATA TTGTCCCACC GGTCTCATTG
  TCCTTTATCC TTTGTGCAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	MSM/Ms
ss8763873	WI_WGS_18_78200756	WI	MOUSE	f	SNP			G	A
ss147555398	ENSMUSSNP5247023	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	MSM/Ms
rs6357791					SNP	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77865962 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	within coordinates
Tssr152043	transcription start site region 152043	317 bp upstream
Tssr152044	transcription start site region 152044	493 bp upstream
Tssr152045	transcription start site region 152045	1584 bp upstream
Tssr152046	transcription start site region 152046	1808 bp upstream
Tssr153960	transcription start site region 153960	272 bp downstream