rs6357808 SNP Detail

Summary

• ID
  rs6357808
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77865966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTAGAGAA GGGGGAGGTG
  GGAGCATCCT CTCAGGCAAA TGGGGGAATG GGGCGAAGAG CTTCTGGAGG GGGGGCTGGG
  GAGGGGAGCA GCATTTGGAA TGTAAATAAA TAAAACAACC TGAAGAAAGA ACAGATCCAT
  CACTGACAGG GAGGCAGTGT GTAGCTGTGA GTTCCGCAGA TGCTTGGGGA GGTTGGGGGC
  Y
  GCGCTCCAGT GTGCAGTGTG GCGGTCAGGA CAGCCTGGAG GGTCTCCTGC CTCTGGTCAT
  CTCGGGTCAG GCACCCACTC TTAGCTAGTC CATGAAGTCT TAACCAGAGG AGCAGAGCAG
  GGAGAAGGCA ACAGTGTGGT GTGCTGCCGT GTGATATTGT CCCACCGGTC TCATTGTCCT
  TTATCCTTTG TGCAGGGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8763890	WI_WGS_18_78200760	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6357808					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77865966 () rs orientation: forward

Symbol	Name	Function Class
Atp5f1a	ATP synthase F1 subunit alpha	within coordinates
Tssr152043	transcription start site region 152043	313 bp upstream
Tssr152044	transcription start site region 152044	489 bp upstream
Tssr152045	transcription start site region 152045	1580 bp upstream
Tssr152046	transcription start site region 152046	1804 bp upstream
Tssr153960	transcription start site region 153960	268 bp downstream