rs6358089 SNP Detail

Summary

• ID
  rs6358089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33358862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTTCAGGA GAGCACGCGC
  AGGGTACTGG CGTCTGCGCA ATGGTCTCGA AGAGTGAGAT AATTTCGAGT TCGTAGCTCT
  GGAAGCCTTA GTGGAAGACT GACTCTTGCA ATTTATACGC TCACCCCACC ACCACCACCA
  CCACCAAAAA AAAAAAAAAA AAAAAAAAGT AATAACATTT CAAGATGGCT TTAAGTTGGA
  Y
  TTAAATCCAC TCGTACCTGC ACCTGCTGAG TATCAGGATT GCAAGGATGT GTTCCCCATA
  GTTGGTGTAG GGTGGATACA CAAGCTGGAC CCGACACACA TTTGTGTCTT AGGTCAGTTT
  CCCAGGTGTG CGCCTACTTC TTTTTTGTTT TTTTGTTTGT TTTGTTTTGT TTTCTTTCTC
  TCTCTCTCTC TTTTTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8764173	WI_WGS_2_33821411	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6358089					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33358862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11539	CpG island 11539	76 bp distal
Gm75558	predicted gene, 75558	within coordinates
Rr373021	regulatory region 373021	within coordinates
Tssr17390	transcription start site region 17390	735 bp downstream
Tssr23602	transcription start site region 23602	278 bp upstream
Zbtb43	zinc finger and BTB domain containing 43	291 bp upstream