rs6358639 SNP Detail

Summary

• ID
  rs6358639
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:33358988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCACCACC ACCACCACCA
  AAAAAAAAAA AAAAAAAAAA AAGTAATAAC ATTTCAAGAT GGCTTTAAGT TGGACTTAAA
  TCCACTCGTA CCTGCACCTG CTGAGTATCA GGATTGCAAG GATGTGTTCC CCATAGTTGG
  TGTAGGGTGG ATACACAAGC TGGACCCGAC ACACATTTGT GTCTTAGGTC AGTTTCCCAG
  S
  TGTGCGCCTA CTTCTTTTTT GTTTTTTTGT TTGTTTTGTT TTGTTTTCTT TCTCTCTCTC
  TCTCTTTTTT TTTTTTTTTT TGGTTTTTTC GAGACAGGGT TTCTCTGTAT AGCTCTGGCT
  GTCCTGGAGC TCACTTTGTA GACCAGGCTG GCCTTGAACT CAGAAATCCG CCTGCCTCTG
  CCTCTGCCTC TGCCTCTGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8764724	WI_WGS_2_33821537	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6358639					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:33358988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11539	CpG island 11539	202 bp distal
Gm75558	predicted gene, 75558	within coordinates
Rr373021	regulatory region 373021	within coordinates
Tssr17390	transcription start site region 17390	861 bp downstream
Tssr23602	transcription start site region 23602	404 bp upstream
Zbtb43	zinc finger and BTB domain containing 43	417 bp upstream