rs6358867 SNP Detail

Summary

• ID
  rs6358867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57662131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         TGCCCAGGAG
  CTCAAAGGCG ATGCACATAT GACCATGGAA GTTGAACCAG TCAGACATCA GGACACAAAG
  GCTAGAGAAA AAGGACAGGT GAGATTCAAG CTCTGCCTCA CCTGACCCCC AATTGTTCTA
  CCAAGGTAAA AAGCAAGCCT TGGAGCCAGA GCACATGCCA ATCCACTACC ACACCCATGT
  GCTTAGCAAG AACTGTACAT GTTGTGTGGA GGGGCTACAT TCTGATCCCA GCTCACCCAT
  R
  GCACCCAGGG TAAGCAGCCC TGACACAGTT ACTGAGAGGC AGATACAACT GCACCAGTAC
  ANCNCAGGCC TCCATGTACN GCTGAGCTTC TAGAGGACCT GGGCAGGTGC AGCCCCTCTG
  CTGACTGTAG CACAGTTAAG TGCTTATAGA GAAGTTCACT GGTGTCTTCT TTAAGTGTCC
  CTAGCCTGTT AAGTCCCTTA ACTCATAAAT GCAAGGCTTG GGCTACTTCA GAACACAAGC
  CAGGCAGGGT                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8764952	WI_WGS_9_58290690	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6358867					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57662131 () rs orientation: forward

Symbol	Name	Function Class
Clk3	CDC-like kinase 3	within coordinates
Rr195918	regulatory region 195918	1531 bp distal
Rr204298	regulatory region 204298	1573 bp distal
Tssr89819	transcription start site region 89819	1440 bp downstream