rs6358969 SNP Detail

Summary

• ID
  rs6358969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:62441140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCAGACAT ACTCTGCTTG
  TTGAAACAAG GTCCGACTCA TGCTTCCTAA TAAAAATAAA ATACTATGCA AAGGAGACAT
  TTTCTGAATT TCAATTCACT TCAAATAAAA TTCTACCTGC TCTTTATTCT AGAAAGCAGA
  CTTTGGGCTG GGGAATCAAA CTGGAGCTTT TGGTTCATGC TAGGCAAACC AGCTATGTTC
  Y
  TAACGTTTCC TTCAGTAATA TGGTAATAAC TCGTAAACCT TTACAGAGTG AAGTTTAATC
  TGTTAGCGTA GCTAGACTTC TTACTGTACG GAAGCCGGTA GCCTATGCAA ACAAAACTGT
  TTACATGGCC ATCCTCGTGA CTCCGCATGA CAAAGCAATC CGAGCAGTTC TGCTCCTTCC
  TTGTTGATCT CGATGAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8765055	WI_WGS_11_62988724	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6358969					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:62441140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3024	CpG island 3024	380 bp proximal
Gm12279	predicted gene 12279	within coordinates
Gm71785	predicted gene, 71785	152 bp upstream
Rr235278	regulatory region 235278	1740 bp distal
Rr246927	regulatory region 246927	within coordinates
Rr250876	regulatory region 250876	1940 bp distal
Rr386162	regulatory region 386162	within coordinates
Tssr102022	transcription start site region 102022	209 bp upstream
Tssr102023	transcription start site region 102023	256 bp upstream
Tssr102024	transcription start site region 102024	495 bp upstream
Tssr102025	transcription start site region 102025	853 bp upstream
Tssr102026	transcription start site region 102026	920 bp upstream
Tssr102027	transcription start site region 102027	948 bp upstream
Tssr102028	transcription start site region 102028	1134 bp upstream
Tssr102029	transcription start site region 102029	1147 bp upstream
Tssr102030	transcription start site region 102030	1179 bp upstream
Tssr102031	transcription start site region 102031	1407 bp upstream
Tssr102032	transcription start site region 102032	1424 bp upstream
Tssr102033	transcription start site region 102033	1442 bp upstream
Tssr102034	transcription start site region 102034	1460 bp upstream
Tssr102035	transcription start site region 102035	1534 bp upstream
Tssr108430	transcription start site region 108430	626 bp downstream
Tssr108431	transcription start site region 108431	679 bp downstream
Ubb	ubiquitin B	1189 bp upstream