rs6359226 SNP Detail

Summary

• ID
  rs6359226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9822753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGACCTG CAAAAAATTT
  TCCAAGCAAC TGATCCCAAG AAACAAGCTG GAGCAGCCAT TCCAATATTG AATAAAATCG
  ACTTTCAACC TAAAGTTATC AAAAAAGATA AGAAGGGACA CTTCATACAC ATCAAAGGTA
  AAATTTACCA ATATGAACTC TCAATTCTGA ACATCTATGC TCCAAATGCA AGGGCATCTA
  Y
  ACTCACTAAA GAAACTCAAC AGCTCAAAGC ACACATTGTA CCACATATAA TAATAGTGGG
  AGACAGTCAA CACTCCACCC TCTTCAATGG ACAGATCCTG GGAACAGAGA CACAGTGAAA
  CTAACAGAAG TTATAAAGCA AATATATTTA AGAGATATCT ATAGAATATT TTTTTCCTAA
  AACAAAAGGA TATACCTTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8765313	WI_WGS_11_9790038	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6359226					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9822753 () rs orientation: forward

Symbol	Name	Function Class
Tssr106858	transcription start site region 106858	984 bp downstream
Tssr106859	transcription start site region 106859	1055 bp downstream