rs6359278 SNP Detail

Summary

• ID
  rs6359278
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:57662193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         ACACAAAGGC
  TAGAGAAAAA GGACAGGTGA GATTCAAGCT CTGCCTCACC TGACCCCCAA TTGTTCTACC
  AAGGTAAAAA GCAAGCCTTG GAGCCAGAGC ACATGCCAAT CCACTACCAC ACCCATGTGC
  TTAGCAAGAA CTGTACATGT TGTGTGGAGG GGCTACATTC TGATCCCAGC TCACCCATNG
  CACCCAGGGT AAGCAGCCCT GACACAGTTA CTGAGAGGCA GATACAACTG CACCAGTACA
  K
  CNCAGGCCTC CATGTACNGC TGAGCTTCTA GAGGACCTGG GCAGGTGCAG CCCCTCTGCT
  GACTGTAGCA CAGTTAAGTG CTTATAGAGA AGTTCACTGG TGTCTTCTTT AAGTGTCCCT
  AGCCTGTTAA GTCCCTTAAC TCATAAATGC AAGGCTTGGG CTACTTCAGA ACACAAGCCA
  GGCAGGGTAG AGCCTGAAGT CCAAGGGCTC TTTATAGAAA GAACAACTGT CAAACCCCAA
  GAGTACTGTG                                                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8765365	WI_WGS_9_58290752	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6359278					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:57662193 () rs orientation: forward

Symbol	Name	Function Class
Clk3	CDC-like kinase 3	within coordinates
Rr195918	regulatory region 195918	1593 bp distal
Rr204298	regulatory region 204298	1635 bp distal
Tssr89819	transcription start site region 89819	1378 bp downstream