rs6359725 SNP Detail

Summary

• ID
  rs6359725
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:59377472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCGAAGT TATGTTTACA
  AAGGGATAAA GATTAACCGA GAGTGATTAC TCGCCCCCTC CTTAGAGAAG TAAGAAAGTT
  CAAGAAATTC TGTCTTGGGG ATAAAGCTGT GCTTTTGGTT GTTATGGCAA CAGTCCCGTT
  TCCCCCACCT CACCCCCACC CCCAACCCCC GTGCCTCGTA GTCCTATACT GAAGCAGGGC
  R
  ATTGCAGTTT CTAGGCCGTG CAGAGAGGTA GAATGCCCAT GTGAAGGGAA AGCGGAAGGT
  CTATAGTCTA GTTTCAGCTC CGGGACTTAC TAACAGTCCT TTGGGTGTGG AAGTGGCAAA
  CTAGTAGGTT CCAGAGACCT TTCTAGAAAG AACATCGCAG GGAAAAATAA AAAGAACCTT
  CAACCTTTTT GAGAGATTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8765813	WI_WGS_19_59454336	WI	MOUSE	f	SNP							G		A
ss50898705	NES13494809	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6359725					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50898705	NES13494809	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59377472 () rs orientation: forward

Symbol	Name	Function Class
Gm33756	predicted gene, 33756	423 bp upstream
Rr370546	regulatory region 370546	183 bp upstream