rs6359802 SNP Detail

Summary

• ID
  rs6359802
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:3878242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCCAGGGTC AGAGGCCTCC CTGGAGGCTT ACTCTCTTCT
  TGCTGGGAAA GTGCCCAGAA GTCTGGGTCT CAGCTCTGCC TCTTGGCTGA GGATGAAGGC
  M
  CAAAGAGACC CTGTCCAAGA AGCTCTGTTG CTTCTGTGGC CCTCACATTC TCCTGATCTG
  AATGGTCTCT GAGAGACCTA GGATACAAGA TCAGCGTCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8765890	WI_WGS_1_3811453	WI	MOUSE	f	SNP					C	A
ss50907577	NES13489884	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C				C	C	C	C	A	C
ss148461544	ENSMUSSNP3466114	ENSEMBL	ENSEMBL_Sanger	f	SNP							A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6359802					SNP	C	C	C	C	C	A	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50907577	NES13489884	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:3878242 () rs orientation: forward

Symbol	Name	Function Class
Rr370728	regulatory region 370728	within coordinates