rs6359822 SNP Detail

Summary

• ID
  rs6359822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:59377525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCCTT AGAGAAGTAA
  GAAAGTTCAA GAAATTCTGT CTTGGGGATA AAGCTGTGCT TTTGGTTGTT ATGGCAACAG
  TCCCGTTTCC CCCACCTCAC CCCCACCCCC AACCCCCGTG CCTCGTAGTC CTATACTGAA
  GCAGGGCGAT TGCAGTTTCT AGGCCGTGCA GAGAGGTAGA ATGCCCATGT GAAGGGAAAG
  Y
  GGAAGGTCTA TAGTCTAGTT TCAGCTCCGG GACTTACTAA CAGTCCTTTG GGTGTGGAAG
  TGGCAAACTA GTAGGTTCCA GAGACCTTTC TAGAAAGAAC ATCGCAGGGA AAAATAAAAA
  GAACCTTCAA CCTTTTTGAG AGATTTGGCA TGAGAAACCC ATTGGCACTT GCCACATCCT
  GTGGGTGAAG GGGGAGTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8765910	WI_WGS_19_59454389	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6359822					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:59377525 () rs orientation: forward

Symbol	Name	Function Class
Gm33756	predicted gene, 33756	370 bp upstream
Rr370546	regulatory region 370546	130 bp upstream
Rr550620	regulatory region 550620	1614 bp distal
Rr550621	regulatory region 550621	1738 bp distal
Rr550622	regulatory region 550622	1708 bp distal
Rr550623	regulatory region 550623	396 bp distal
Rr550624	regulatory region 550624	within coordinates
Rr550625	regulatory region 550625	297 bp proximal