rs6359839 SNP Detail

Summary

• ID
  rs6359839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9822886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTAAAA TTTACCAATA
  TGAACTCTCA ATTCTGAACA TCTATGCTCC AAATGCAAGG GCATCTATAC TCACTAAAGA
  AACTCAACAG CTCAAAGCAC ACATTGTACC ACATATAATA ATAGTGGGAG ACAGTCAACA
  CTCCACCCTC TTCAATGGAC AGATCCTGGG AACAGAGACA CAGTGAAACT AACAGAAGTT
  R
  TAAAGCAAAT ATATTTAAGA GATATCTATA GAATATTTTT TTCCTAAAAC AAAAGGATAT
  ACCTTCTTCT CTGCACCTCA TGGTGCCTTC TCTAAAACTG ACCATATTAT CAGACACAAA
  AGAGGCCTGA ACAGATACAA GAAGATTGAA ATAATCCTAT GCATCCTCTC TGATCACCAA
  GAACTAAGGC AGATCTTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8765927	WI_WGS_11_9790171	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6359839					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9822886 () rs orientation: forward

Symbol	Name	Function Class
Tssr106858	transcription start site region 106858	851 bp downstream
Tssr106859	transcription start site region 106859	922 bp downstream