rs6359872 SNP Detail

Summary

• ID
  rs6359872
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:9822905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAACTCTC AATTCTGAAC
  ATCTATGCTC CAAATGCAAG GGCATCTATA CTCACTAAAG AAACTCAACA GCTCAAAGCA
  CACATTGTAC CACATATAAT AATAGTGGGA GACAGTCAAC ACTCCACCCT CTTCAATGGA
  CAGATCCTGG GAACAGAGAC ACAGTGAAAC TAACAGAAGT TATAAAGCAA ATATATTTAA
  K
  AGATATCTAT AGAATATTTT TTTCCTAAAA CAAAAGGATA TACCTTCTTC TCTGCACCTC
  ATGGTGCCTT CTCTAAAACT GACCATATTA TCAGACACAA AAGAGGCCTG AACAGATACA
  AGAAGATTGA AATAATCCTA TGCATCCTCT CTGATCACCA AGAACTAAGG CAGATCTTCA
  CTGACAACAT AAATAATAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8765960	WI_WGS_11_9790190	WI	MOUSE	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6359872					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:9822905 () rs orientation: forward

Symbol	Name	Function Class
Tssr106858	transcription start site region 106858	832 bp downstream
Tssr106859	transcription start site region 106859	903 bp downstream