rs6360003 SNP Detail

Summary

• ID
  rs6360003
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117299805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTGTTT CCTATAGAGG
  AGGCAGCGAT CTGAAAGAGT TACTCAGACA TGTAAAGAAC AGGAGATGTC TTAAGGGCGT
  GGGGTTAAGT GTACATGGAG CTCATCCCAG CAGAGAAGGG ACAAGAGGCT CAGGCTCCTT
  AATTCTCTAC ACCCCAGTCA GCCCACAGCT CCTACAGTGT TCTATAGGGA CTCCAGGGGG
  S
  CACATGCTCC AATTTCTTTT TCCTGTGACC AAATACAGCC AAGGTGACTG TACTCTCAGG
  CTCCCCATGG CCAAGGTGGC ACAGGCTGGT GGAGAATAGG GACTTAAACT CTTTTCTTCC
  TGAACCCTTC TGAGCTCTAA AGCATTTCTA TAGAGCAAAG CAAGGTCATT CTAAGGCCCA
  CAAAGCCATG TGCATACGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8766092	WI_WGS_8_116559086	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6360003					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117299805 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	1334 bp downstream
Tssr83067	transcription start site region 83067	1174 bp upstream
Tssr83068	transcription start site region 83068	896 bp downstream