rs6360390 SNP Detail

Summary

• ID
  rs6360390
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:105345344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACAGAAAG ATGGATCCCC
  TGCTGCTCCT GTTGGGGAGA GAAGCCTGTC TGAATATTAA TCAGGCAGAG GACATCGGGA
  TTCATAAGGA AACTATGTTA ACGGCTACGA AGGATACAGC CCACAGTCCA GCTGGATGAA
  ACATTGTAGG TACACAGTTA ACACAGCAAA GCCAGCTACT CTATCCTGGC CTCAGGGTGG
  W
  ATAATTTAAA GAAGGTTCTT GGTCAGAAGG CATGAAATAA CCTGGCCTGA AGAGGCAGGA
  AACAGTACCA CTGAAAGATT TGCTAAGTCT TCCTGACTTC ACAATCATCT GCAAAAGAAA
  GAACTTTAAC ATTGCCCACG AGAGACTCTC CCCCACCCAC CACAAGCTCC CCATTACACT
  GCATGTCACG TAAAATAACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8766484	WI_WGS_11_106235225	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6360390					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105345344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	1930 bp proximal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	Intron
Rr457972	regulatory region 457972	1533 bp distal
Rr457973	regulatory region 457973	1693 bp proximal
Tssr105440	transcription start site region 105440	1535 bp downstream
Tssr111262	transcription start site region 111262	759 bp downstream
Tssr111263	transcription start site region 111263	781 bp downstream