rs6360416 SNP Detail

Summary

• ID
  rs6360416
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105345354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATCCCC TGCTGCTCCT
  GTTGGGGAGA GAAGCCTGTC TGAATATTAA TCAGGCAGAG GACATCGGGA TTCATAAGGA
  AACTATGTTA ACGGCTACGA AGGATACAGC CCACAGTCCA GCTGGATGAA ACATTGTAGG
  TACACAGTTA ACACAGCAAA GCCAGCTACT CTATCCTGGC CTCAGGGTGG AATAATTTAA
  R
  GAAGGTTCTT GGTCAGAAGG CATGAAATAA CCTGGCCTGA AGAGGCAGGA AACAGTACCA
  CTGAAAGATT TGCTAAGTCT TCCTGACTTC ACAATCATCT GCAAAAGAAA GAACTTTAAC
  ATTGCCCACG AGAGACTCTC CCCCACCCAC CACAAGCTCC CCATTACACT GCATGTCACG
  TAAAATAACA GTTGAAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8766510	WI_WGS_11_106235235	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6360416					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105345354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	1920 bp proximal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	within coordinates
Rr457972	regulatory region 457972	1543 bp distal
Rr457973	regulatory region 457973	1683 bp proximal
Tssr105440	transcription start site region 105440	1545 bp downstream
Tssr111262	transcription start site region 111262	749 bp downstream
Tssr111263	transcription start site region 111263	771 bp downstream