rs6360526 SNP Detail

Summary

• ID
  rs6360526
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117299894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTACATGGA GCTCATCCCA
  GCAGAGAAGG GACAAGAGGC TCAGGCTCCT TAATTCTCTA CACCCCAGTC AGCCCACAGC
  TCCTACAGTG TTCTATAGGG ACTCCAGGGG GCCACATGCT CCAATTTCTT TTTCCTGTGA
  CCAAATACAG CCAAGGTGAC TGTACTCTCA GGCTCCCCAT GGCCAAGGTG GCACAGGCTG
  R
  TGGAGAATAG GGACTTAAAC TCTTTTCTTC CTGAACCCTT CTGAGCTCTA AAGCATTTCT
  ATAGAGCAAA GCAAGGTCAT TCTAAGGCCC ACAAAGCCAT GTGCATACGC GGGAGCCATA
  GTCTAGAGCC AGGTCACTAA TTCTCATGCA AACGTTCAAC TGTCTGCATC CTTCAGAGCT
  TAGGGCCATG TATCCCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8766621	WI_WGS_8_116559175	WI	MOUSE	f	SNP							G		A
ss51979468	NES14997614	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		A		G	G	G	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6360526					SNP	G	G	G	G	G	G	G	A	A	G	G	G	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51979468	NES14997614	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117299894 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	1245 bp downstream
Tssr83067	transcription start site region 83067	1263 bp upstream
Tssr83068	transcription start site region 83068	807 bp downstream