rs6360916 SNP Detail

Summary

• ID
  rs6360916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:105345423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATAAGG AAACTATGTT
  AACGGCTACG AAGGATACAG CCCACAGTCC AGCTGGATGA AACATTGTAG GTACACAGTT
  AACACAGCAA AGCCAGCTAC TCTATCCTGG CCTCAGGGTG GAATAATTTA AAGAAGGTTC
  TTGGTCAGAA GGCATGAAAT AACCTGGCCT GAAGAGGCAG GAAACAGTAC CACTGAAAGA
  Y
  TTGCTAAGTC TTCCTGACTT CACAATCATC TGCAAAAGAA AGAACTTTAA CATTGCCCAC
  GAGAGACTCT CCCCCACCCA CCACAAGCTC CCCATTACAC TGCATGTCAC GTAAAATAAC
  AGTTGAAACA CCACCGTGCC ACATGTAGTT TCTTATTTAA CTATATCAAT ACTCTATGAA
  ACTAAACAAT CTGTCCCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8767011	WI_WGS_11_106235304	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6360916					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105345423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	1851 bp proximal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	Intron
Rr457972	regulatory region 457972	1612 bp distal
Rr457973	regulatory region 457973	1614 bp proximal
Tssr105440	transcription start site region 105440	1614 bp downstream
Tssr111262	transcription start site region 111262	680 bp downstream
Tssr111263	transcription start site region 111263	702 bp downstream