rs6361089 SNP Detail

Summary

• ID
  rs6361089
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117300003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCACATGC TCCAATTTCT
  TTTTCCTGTG ACCAAATACA GCCAAGGTGA CTGTACTCTC AGGCTCCCCA TGGCCAAGGT
  GGCACAGGCT GGTGGAGAAT AGGGACTTAA ACTCTTTTCT TCCTGAACCC TTCTGAGCTC
  TAAAGCATTT CTATAGAGCA AAGCAAGGTC ATTCTAAGGC CCACAAAGCC ATGTGCATAC
  R
  CGGGAGCCAT AGTCTAGAGC CAGGTCACTA ATTCTCATGC AAACGTTCAA CTGTCTGCAT
  CCTTCAGAGC TTAGGGCCAT GTATCCCTCC CACTTGTGAC TGGGGCAGCT ATTCCCATTC
  AAGGGCAGCC AAAGAGAACC ATCTCTACTT TTGCAGCCCA CCTCCCCTCC ACAAGCTGTG
  CAGACTCTGC GCTGTGCCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8767184	WI_WGS_8_116559284	WI	MOUSE	f	SNP							G		A
ss51979466	NES14997616	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6361089					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51979466	NES14997616	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117300003 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	1136 bp downstream
Tssr83067	transcription start site region 83067	1372 bp upstream
Tssr83068	transcription start site region 83068	698 bp downstream