rs6361472 SNP Detail

Summary

• ID
  rs6361472
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105345522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTATCCTG GCCTCAGGGT
  GGAATAATTT AAAGAAGGTT CTTGGTCAGA AGGCATGAAA TAACCTGGCC TGAAGAGGCA
  GGAAACAGTA CCACTGAAAG ATTTGCTAAG TCTTCCTGAC TTCACAATCA TCTGCAAAAG
  AAAGAACTTT AACATTGCCC ACGAGAGACT CTCCCCCACC CACCACAAGC TCCCCATTAC
  W
  CTGCATGTCA CGTAAAATAA CAGTTGAAAC ACCACCGTGC CACATGTAGT TTCTTATTTA
  ACTATATCAA TACTCTATGA AACTAAACAA TCTGTCCCCT TGGTGTCTGA GACAGTAGAG
  TATCTCAGAC TAGGAAAATA GTCTCCAGAG GAACTTTTTA GGCTGCACTA CAAGTTTGAA
  AAACTGACCA GAATGAATGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8767568	WI_WGS_11_106235403	WI	MOUSE	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6361472					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105345522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	1752 bp proximal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	within coordinates
Rr457972	regulatory region 457972	1711 bp distal
Rr457973	regulatory region 457973	1515 bp proximal
Tssr105440	transcription start site region 105440	1713 bp downstream
Tssr111262	transcription start site region 111262	581 bp downstream
Tssr111263	transcription start site region 111263	603 bp downstream
Tssr111264	transcription start site region 111264	1978 bp downstream