rs6361739 SNP Detail

Summary

• ID
  rs6361739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21693221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATATACAC ACAGAATGTG
  TGTGTGCATT TGTGTGCACA CATCAAATGC TGCCCACTCT CACTCCTACC TCTCCACTAT
  TCTGGTCTAC AATCCCAACA GTGACTCTAC TGTGTCCATA TCTATTCATA TTGCTTGTGA
  TCCACTGAGA TGAACCAGAG CCATTTGTGA GACTGTGAAT TTGGAGCCTG ATGTGTGCTG
  R
  AGCCTGATGT GCTCAGCACA GGATAACAAC TAAAGGCAAT GATTCTTCTC CTACAATATA
  TCCATAGCCA ATGTCTGAGA AATAAAGTGA GCCTTTTCCC CTTTCCAGAC TGTCTGGTCT
  TCTGTAAAGT CAGTGCAGAT AAAGACAGCT GCTGTTCGTT ACTGATTACA ATAGTTGTAT
  GGCGTCTAGA GAATGGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8767835	WI_WGS_17_20530674	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6361739					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21693221 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	858 bp upstream
Gm56906	predicted gene, 56906	1788 bp upstream
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	within coordinates
Rr522959	regulatory region 522959	417 bp proximal
Rr522960	regulatory region 522960	724 bp proximal
Rr522961	regulatory region 522961	1698 bp proximal
Rr522962	regulatory region 522962	1799 bp proximal
Tssr142877	transcription start site region 142877	884 bp upstream
Tssr142878	transcription start site region 142878	1290 bp upstream
Tssr142879	transcription start site region 142879	1948 bp upstream
Tssr146591	transcription start site region 146591	1350 bp upstream