rs6362038 SNP Detail

Summary

• ID
  rs6362038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20722094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTAACTG AACAATCACC
  AGGCAAGCAC CCTATACTGG CCTCCATCTA CACCTACAGT TTTTTCTCTT TATTTATTTA
  CCTTTTTGAG ACAAGCTCTC ACTACACAGC CCAAGCTAAA CTTGAACTTT GTTTTTAAAG
  ATAGGGTCTG GGGCTGGAGA GATGGCTCAG AGATTAAGAG CACTGACTGC TCTTCCAAAG
  R
  TCCTGAGTTC AATTCCCAGC AACCACATGG TAACTCACAA TCATCAGTAA TGGGATCTGA
  TGCCCTCTTC TGGTGTGTCT GAAGATGGCT ACAGTGTACT CATACATAAA ATAAATAAAT
  CTAAAAAAAA AAAAAAAAGA CAGGGTCTTA TATAGCCTAA TCTGGCCTTG AACTTGTGAT
  AAACAAGGTG TGCCTGAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8768134	WI_WGS_14_15783109	WI	MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6362038					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20722094 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	615 bp downstream
Rr287462	regulatory region 287462	1494 bp distal
Rr287463	regulatory region 287463	within coordinates
Rr287464	regulatory region 287464	907 bp proximal
Rr291720	regulatory region 291720	294 bp distal
Rr294644	regulatory region 294644	1557 bp distal
Rr296876	regulatory region 296876	1506 bp proximal
Rr389336	regulatory region 389336	1738 bp upstream