rs6362145 SNP Detail

Summary

• ID
  rs6362145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80819112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCTTCT TAATGATTCT
  CATTTCAGAT CATTTTAAAA TCTACCCTTT GAACTTGTAT TTGCTCAAAG CATGGGCCCA
  CAGCATCCAA TTAAAGTTGC ATATCTGGTC AAATAAAGCT ATAATAACTT GTTTCGCTTT
  TGTAAATGAT ATGGAAAGGT GTATTACAAA GCTTCCTTTA CCAACAGGAA GCCACCATCA
  Y
  ATTTCAAACA TCTGTCTACT CTGACATCTT GCAAACAGGA CACAGTAGGT GCATGAGTGG
  ATGCAAACAG TGCTGTAGGT GGGCATTTTT ATAACCGGTC TGGTTTTCTA ACAAAAGCAG
  CAACATCGCT CTGCAGAAGG ATATACGATG TGAGGAACGT ACGATGGGCA CAAGTACTGC
  TTCTTTTTCC CCTTCCCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8768241	WI_WGS_3_81600012	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6362145					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80819112 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	1265 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	733 bp upstream
Gm65109	predicted gene, 65109	1416 bp upstream
Rr578673	regulatory region 578673	1002 bp proximal
Rr578674	regulatory region 578674	1427 bp proximal
Rr578675	regulatory region 578675	1713 bp proximal
Tssr33773	transcription start site region 33773	1737 bp downstream