rs6362201 SNP Detail

Summary

• ID
  rs6362201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20722180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACAAGC TCTCACTACA
  CAGCCCAAGC TAAACTTGAA CTTTGTTTTT AAAGATAGGG TCTGGGGCTG GAGAGATGGC
  TCAGAGATTA AGAGCACTGA CTGCTCTTCC AAAGATCCTG AGTTCAATTC CCAGCAACCA
  CATGGTAACT CACAATCATC AGTAATGGGA TCTGATGCCC TCTTCTGGTG TGTCTGAAGA
  Y
  GGCTACAGTG TACTCATACA TAAAATAAAT AAATCTAAAA AAAAAAAAAA AAGACAGGGT
  CTTATATAGC CTAATCTGGC CTTGAACTTG TGATAAACAA GGTGTGCCTG AGGTTCTGAT
  CTTCCTGTCT CTGCCTCCAT TCTAAGTGCA AAGTTGAGTT ATAGGAAAAT TTAAAATGCA
  ATTTATAGCC TCCATCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8768297	WI_WGS_14_15783195	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6362201					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20722180 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	529 bp downstream
Rr287462	regulatory region 287462	1580 bp distal
Rr287463	regulatory region 287463	within coordinates
Rr287464	regulatory region 287464	821 bp proximal
Rr291720	regulatory region 291720	380 bp distal
Rr294644	regulatory region 294644	1643 bp distal
Rr296876	regulatory region 296876	1420 bp proximal
Rr389336	regulatory region 389336	1652 bp upstream