rs6362278 SNP Detail

Summary

• ID
  rs6362278
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:61755906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGACAGA CATCCCTCAG
  TGGATCCTTG ATTGTGTGCA GAAGTACTCT CCCGGAGGAC AGCAGGGGAC TGGCTGTCAG
  CGCTCCACCC AGGGCCCTGT TACCAGAGAC GACACAGGCC TTTGAGGCAC ACACACGGGA
  ACCAGCTGCA GCCTGTACTT ACAGGAGGTC CTGAAAGAGA GAGAAAAGGG CTGGTCAGTA
  W
  CCCTGCCACC AGAGGGAGGG GGTGGGGAGG TCACCTTAGA AACAATATCC AAGAAGTTTT
  CTGGCAAAGA GGTTTCCATC TGGTCTTCAA AGTTTGTCTT TTCCTAGCTC ACTCTTGCCA
  GCGTATTTCA TTTCCTCTTT ATTTTCTCTC CATGTTTTTA TGATTGGATG AGAAACGCAA
  GGGTCTGGAC CCCAGGCCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8768374	WI_WGS_10_61937321	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6362278					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:61755906 () rs orientation: forward

Symbol	Name	Function Class
Col13a1	collagen, type XIII, alpha 1	within coordinates
Gm30121	predicted gene, 30121	within coordinates
Rr215609	regulatory region 215609	within coordinates