rs6362493 SNP Detail

Summary

• ID
  rs6362493
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  116
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:43856997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                         GTGGTTTCAG
  TCACTGTGGT TTCAGAGAAA TCTATTGGTA AAACTTACTA CCCCTGGAAT CTAAGATGAA
  ATGAATCTAA GTGAAGTTTA AGACAGCAAC TAAGGAGTTT CTAGGACTCA GCCACAGGAT
  GTTGTAAAAA GCTAATTGGC AAACACATAA ATGTAATGAT CTGGTAGTTG GAtccacata
  tgagagaaaa tatttggcat ttggctttct AGCATCGAGT GATTGAATGA ATCTTTAGAT
  Y
  TGTGCATCTC TATTGAAGGG CCTGTAGAAG TCAGAAAACT AAAAAGGGGT CACAGGTAAT
  GGGAGTGGAA AAGAAAGATG TTAAGGGAGG AGACAGAGTA GAGCTCAGGT GTTATGAAGA
  CAGAAATAGC ACTAATGGGG ACACCCAGGT GGATAGAGAA ATGAGAAGGT AATGAAGAGG
  AAGAAGGTGG GGCCGGGGGT GGGGGTGAGG AATAACTACT GCTGAGTGCC AGAGTACTGC
  TCTAGCAAGG                                                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8768589	WI_WGS_18_43882802	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6362493					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:43856997 () rs orientation: forward

Symbol	Name	Function Class
Rr348914	regulatory region 348914	1203 bp proximal
Rr393629	regulatory region 393629	673 bp upstream