rs6362553 SNP Detail

Summary

• ID
  rs6362553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105345727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTCACGTA AAATAACAGT
  TGAAACACCA CCGTGCCACA TGTAGTTTCT TATTTAACTA TATCAATACT CTATGAAACT
  AAACAATCTG TCCCCTTGGT GTCTGAGACA GTAGAGTATC TCAGACTAGG AAAATAGTCT
  CCAGAGGAAC TTTTTAGGCT GCACTACAAG TTTGAAAAAC TGACCAGAAT GAATGAGAAA
  Y
  AGAAATAACT ACATAGGAAT AAATCCAGAG GAAATCATGC TTAATACTCA AGAGTGCCTT
  TTTGTGGACC TTCTCAACCA GATGGCCATT TGAAGCCAAG GATTTTGTTT TGTTTTGTTT
  TGTTTTTCAG ATAGAGGCAG GTGCTAGAGT GCTTGCGAAG GGGGGGGGGG GAACGTGGGC
  CAGGCACAAT TCCGAGATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8768649	WI_WGS_11_106235608	WI	MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6362553					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105345727 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4003	CpG island 4003	1547 bp proximal
Gm39417	predicted gene, 39417	within coordinates
Marchf10	membrane associated ring-CH-type finger 10	within coordinates
Rr457972	regulatory region 457972	1916 bp distal
Rr457973	regulatory region 457973	1310 bp proximal
Rr457974	regulatory region 457974	1824 bp proximal
Tssr3699	transcription start site region 3699	1858 bp downstream
Tssr105440	transcription start site region 105440	1918 bp downstream
Tssr111262	transcription start site region 111262	376 bp downstream
Tssr111263	transcription start site region 111263	398 bp downstream
Tssr111264	transcription start site region 111264	1773 bp downstream