rs6362763 SNP Detail

Summary

• ID
  rs6362763
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21693378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCATTTG TGAGACTGTG
  AATTTGGAGC CTGATGTGTG CTGGAGCCTG ATGTGCTCAG CACAGGATAA CAACTAAAGG
  CAATGATTCT TCTCCTACAA TATATCCATA GCCAATGTCT GAGAAATAAA GTGAGCCTTT
  TCCCCTTTCC AGACTGTCTG GTCTTCTGTA AAGTCAGTGC AGATAAAGAC AGCTGCTGTT
  S
  GTTACTGATT ACAATAGTTG TATGGCGTCT AGAGAATGGT GTATCTTGCT TAGCCTTTCC
  TCCTTTCTCT TATTTCCTAA CCACCTCTTC TTCCTTGGTG TTCCCAGAGC TAGAGATGGA
  TGGTGTAGCT GACATTTTTA GAATTAGAAC CATATACTTT ACTTGTTTTC TATATCTAGG
  AAAGCCATGA GTTTCTGAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8768860	WI_WGS_17_20530831	WI	MOUSE	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6362763					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21693378 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	701 bp upstream
Gm56906	predicted gene, 56906	1631 bp upstream
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	within coordinates
Rr522959	regulatory region 522959	260 bp proximal
Rr522960	regulatory region 522960	567 bp proximal
Rr522961	regulatory region 522961	1541 bp proximal
Rr522962	regulatory region 522962	1642 bp proximal
Tssr142877	transcription start site region 142877	727 bp upstream
Tssr142878	transcription start site region 142878	1133 bp upstream
Tssr142879	transcription start site region 142879	1791 bp upstream
Tssr146591	transcription start site region 146591	1507 bp upstream