rs6362825 SNP Detail

Summary

• ID
  rs6362825
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21693422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGATGT GCTCAGCACA
  GGATAACAAC TAAAGGCAAT GATTCTTCTC CTACAATATA TCCATAGCCA ATGTCTGAGA
  AATAAAGTGA GCCTTTTCCC CTTTCCAGAC TGTCTGGTCT TCTGTAAAGT CAGTGCAGAT
  AAAGACAGCT GCTGTTCGTT ACTGATTACA ATAGTTGTAT GGCGTCTAGA GAATGGTGTA
  W
  CTTGCTTAGC CTTTCCTCCT TTCTCTTATT TCCTAACCAC CTCTTCTTCC TTGGTGTTCC
  CAGAGCTAGA GATGGATGGT GTAGCTGACA TTTTTAGAAT TAGAACCATA TACTTTACTT
  GTTTTCTATA TCTAGGAAAG CCATGAGTTT CTGAATCTAC CAAAATTCTG TTGGATTAGA
  AAAGCACCTT GTGCATGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8768922	WI_WGS_17_20530875	WI	MOUSE	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6362825					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21693422 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	657 bp upstream
Gm56906	predicted gene, 56906	1587 bp upstream
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	within coordinates
Rr522959	regulatory region 522959	216 bp proximal
Rr522960	regulatory region 522960	523 bp proximal
Rr522961	regulatory region 522961	1497 bp proximal
Rr522962	regulatory region 522962	1598 bp proximal
Tssr142877	transcription start site region 142877	683 bp upstream
Tssr142878	transcription start site region 142878	1089 bp upstream
Tssr142879	transcription start site region 142879	1747 bp upstream
Tssr146591	transcription start site region 146591	1551 bp upstream