rs6363363 SNP Detail

Summary

• ID
  rs6363363
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:21693512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAATGGTGTA TCTTGCTTAG CCTTTCCTCC TTTCTCTTAT
  TTCCTAACCA CCTCTTCTTC CTTGGTGTTC CCAGAGCTAG AGATGGATGG TGTAGCTGAC
  W
  TTTTTAGAAT TAGAACCATA TACTTTACTT GTTTTCTATA TCTAGGAAAG CCATGAGTTT
  CTGAATCTAC CAAAATTCTG TTGGATTAGA AAAGCACCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss8769460	WI_WGS_17_20530965	WI	MOUSE	f	SNP					A		T
ss46017305	mCV23816015	ABI	CRAMUS_MOUSE	f	SNP	T	T			A			T
ss60547456	NES16569634	PERLEGEN	MM_PANEL2	f	SNP		T	A	A		T			A	T		A	A	T		A
ss145288202	ENSMUSSNP1726978	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T						T
ss325321885	CHEV_17_21610214	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs6363363					SNP	T	T	A	A	A	T	T	T	A	T	T	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60547456	NES16569634	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:21693512 () rs orientation: forward

Symbol	Name	Function Class
Gm52290	predicted gene, 52290	567 bp upstream
Gm56906	predicted gene, 56906	1497 bp upstream
Rr392397	regulatory region 392397	within coordinates
Rr522958	regulatory region 522958	34 bp distal
Rr522959	regulatory region 522959	126 bp proximal
Rr522960	regulatory region 522960	433 bp proximal
Rr522961	regulatory region 522961	1407 bp proximal
Rr522962	regulatory region 522962	1508 bp proximal
Tssr142877	transcription start site region 142877	593 bp upstream
Tssr142878	transcription start site region 142878	999 bp upstream
Tssr142879	transcription start site region 142879	1657 bp upstream
Tssr146591	transcription start site region 146591	1641 bp upstream