rs6363756 SNP Detail

Summary

• ID
  rs6363756
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20722454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGGCCTT GAACTTGTGA
  TAAACAAGGT GTGCCTGAGG TTCTGATCTT CCTGTCTCTG CCTCCATTCT AAGTGCAAAG
  TTGAGTTATA GGAAAATTTA AAATGCAATT TATAGCCTCC ATCTTTAAGC TGTGAATCTT
  AGCTCTTATT AGGAGTGCAT AACTTTAAGC AAGACAGATT ATATCTGCCT CCTTATGGTG
  W
  GATGAAATAT GAATGGGATA AATCATGTGA AATGCTAAGG TGAGGGAGGG CTCAAGCTCG
  GGCAGCTCAA GTGCTCAACA AATGTTATCT GCATTTGGCA AATTCTTAAA CTGACAACTG
  TTAGTCAGCA AGAGAATCAA CCAGGAGGGA GTCATTTGTC AAGCTTGGTG TAATGGAGTA
  CTGTTTGCTG AGCCCCGTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss8769854	WI_WGS_14_15783469	WI	MOUSE	f	SNP							T		A
ss49162254	NES12530994	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T		A		T	T	T	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs6363756					SNP	T	T	T	T	T	T	T	A	A	T	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49162254	NES12530994	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20722454 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	255 bp downstream
Cpgi6207	CpG island 6207	1759 bp proximal
Rr287462	regulatory region 287462	1854 bp distal
Rr287463	regulatory region 287463	254 bp distal
Rr287464	regulatory region 287464	547 bp proximal
Rr291720	regulatory region 291720	654 bp distal
Rr294644	regulatory region 294644	1917 bp distal
Rr296876	regulatory region 296876	1146 bp proximal
Rr389336	regulatory region 389336	1378 bp upstream
Sec24c	SEC24 homolog C, COPII coat complex component	1922 bp upstream
Tssr124386	transcription start site region 124386	1912 bp upstream
Tssr124387	transcription start site region 124387	1925 bp upstream
Tssr127653	transcription start site region 127653	1728 bp downstream