rs6364043 SNP Detail

Summary

• ID
  rs6364043
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:183850187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC CTGGAAGCTT ACGGAGGCAT
  W
  TTATGTACAT ATAATGATTT AGTGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
ss8770145	WI_WGS_1_185216078	WI	MOUSE	f	SNP		T	A
ss146417569	ENSMUSSNP6657431	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			T		A
ss320165988	CHEV_1_185941869	CHEVERUD	SCREENING_POP	f	SNP					A		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	MSM/Ms	SM/J
rs6364043					SNP	T	T	A	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:183850187 () rs orientation: forward

Symbol	Name	Function Class
Gm69596	predicted gene, 69596	284 bp upstream
Rr425179	regulatory region 425179	33 bp proximal
Rr425180	regulatory region 425180	295 bp proximal
Tssr10581	transcription start site region 10581	282 bp upstream