rs6364390 SNP Detail

Summary

• ID
  rs6364390
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:80819544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTATTCAC ACTTAGGGAG CATGTGATAA GCCTGTGACT
  TCCCTTTAAG GAGCTTCTCA TGATGGCTAC CCAACGGGCA ATCGTATCTC AAATCCTACA
  Y
  CACTGAACGT TTGAGTGTCC TTTATATAGC AGGAAAGCCT ATTTATAGTC ATGGTGAGAC
  TCAGTTCAAG TAAAGATATA GAGAAAACCA GGTTCTAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
ss8770493	WI_WGS_3_81600444	WI	MOUSE	f	SNP		T	C
ss45551043	mCV24542484	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss135386135	ENSMUSSNP1731658	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320812973	CHEV_3_80716159	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	CZECHII/EiJ	LG/J	SM/J
rs6364390					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80819544 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13282	CpG island 13282	833 bp proximal
Glrb	glycine receptor, beta subunit	within coordinates
Gm54207	predicted gene, 54207	301 bp upstream
Gm65109	predicted gene, 65109	984 bp upstream
Rr578673	regulatory region 578673	570 bp proximal
Rr578674	regulatory region 578674	995 bp proximal
Rr578675	regulatory region 578675	1281 bp proximal
Tssr33773	transcription start site region 33773	1305 bp downstream