rs6364685 SNP Detail

Summary

• ID
  rs6364685
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:74871164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTACAAA TAAACTTGAG
  GCAAGAAAAA AAATAGTTTG CCAGTGTTTT GCTGTAGAGA ACACCTCTAG ATCTGGGCAA
  TGGTGATGTG TGTTTAGATG CCTTCTCGGG GATCTGAAGG CTCCTTCTGA TGAAGACTAC
  TCAGTGGAGT CTAGAGACAT CTGATGGGTG ATTGAGAAGG GATGAAAAGC CAGGGCAGCC
  K
  TAAGATTCCA CTGAAATGCT CTTTGTCCCT GCATGGGGGA TTGATCTTTT TGGAGCTAAT
  CTTTCAGTAG CTGCTATAAA ATAAACACCC AGAGTCCCAA AGTTACCACC CCCACCTCAT
  GTCCTTAAAG TCCAGGAAGA CATAGGCAAA TGGTACACGC CCATTATTCT ATCACATGGG
  GGAAGGAGGC AACAGGATCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss8770789	WI_WGS_10_75429841	WI	MOUSE	f	SNP				G		T
ss52365278	NES15274492	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		T		G	G	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs6364685					SNP	G	G	G	G	T	T	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52365278	NES15274492	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:74871164 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1716	CpG island 1716	1545 bp proximal
Gm40692	predicted gene, 40692	305 bp downstream
Gm68172	predicted gene, 68172	754 bp downstream
Rab36	RAB36, member RAS oncogene family	1726 bp upstream
Rr433913	regulatory region 433913	1244 bp proximal
Tssr94068	transcription start site region 94068	1745 bp upstream
Tssr94069	transcription start site region 94069	1912 bp upstream
Tssr94070	transcription start site region 94070	1959 bp upstream