rs6364689 SNP Detail

Summary

• ID
  rs6364689
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146016135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGCATGCC CTTTCTGGAT
  TATGCGTGCA CGATGATAAT ATTAATTTTG CTAGGAGACA CGCTCTTTGC TGACTGTGAT
  AAAGACGCAG GCTGCTGTGC TGAGACCATG GGTGGAAACG AAGCAGACTG GATGTTAATT
  AATCGTTCTC CCTCAACAGC CTGCGGAGGA CTCTCCAGCG CTGTGAAAAC TAGCCAACCA
  K
  GGGGAAGCTT GATTCAAGTT CAAGGCCGAT TCCCCTGCAT CCCGCAACCA AAGCCTACGG
  TGACTTCTTC AGTAAGATCT TTAGCATCCA GTTCTGGTGG GCAACCAACA GTTTGCTTCA
  TTTTTTTTTA AACTCTGCTT ATGAATGAGA TTGCCTTATG ATGGTCCTGC TTTGTATTGT
  TTATTTGATG TTAGAATCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
ss8770793	WI_WGS_3_146843628	WI	MOUSE	f	SNP			T	G
ss136042999	ENSMUSSNP6330432	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G			T
ss321009827	CHEV_3_145973344	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CZECHII/EiJ	DBA/2J	LG/J	SM/J
rs6364689					SNP	T	G	T	G	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146016135 () rs orientation: forward

Symbol	Name	Function Class
D3Mit292	DNA segment, Chr 3, Massachusetts Institute of Technology 292	1416 bp proximal
Rr586996	regulatory region 586996	548 bp proximal