GACTCGCTGC TCTATCCTCT CTGAGCTGCT GAATGCACAG GAAGGCCCGC GCACCGCAGG CCAACGCTGA GGCTCCGAGA GTTTGTGAGC AGATTCGAGT GAGAGACTCC TATATCGTTT TCCCCAACTT GCCTCCCTTT GCTCTGGGAA ACGATGATAC GGGCAGGAGG ACAAGAAACT GGATAAGCTC GGACGCTGCC R TTAAGAGAAA AGGGATCATT TCAAAAGTGG CGGGTGGGCC TGAGTGTAAC ATCTCAGGAT TTGAAAGCGC TACAGCGGGC AATTGTCACC GGGCCGCAGC TCTCCTGTGG ACGCTGGTTT GTAGGAAATA GCGGCCTGCT GGATGGACAC TCTCCAGCGG GTGACGGGCG GCTGGGTCAG GCACCGCAGT GAATCAGGTC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
CZECHII/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss8771083 | WI_WGS_16_94813405 | WI | MOUSE | f | SNP | G | A | |||||||||||
ss60509721 | NES16529305 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | G | G | A | A | G | ||
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C57BL/6J |
CZECHII/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs6364978 | SNP | G | G | G | G | G | A | G | G | G | G | A | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60509721 | NES16529305 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr16:93887728 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi8493 | CpG island 8493 | 622 bp distal | ||||||
Cpgi8494 | CpG island 8494 | within coordinates | ||||||
Gm31175 | predicted gene, 31175 | 1725 bp upstream | ||||||
Gm60844 | predicted gene, 60844 | 1767 bp upstream | ||||||
Rr520042 | regulatory region 520042 | 1928 bp distal | ||||||
Rr520043 | regulatory region 520043 | 1778 bp distal | ||||||
Rr520044 | regulatory region 520044 | 1277 bp distal | ||||||
Rr520045 | regulatory region 520045 | within coordinates | ||||||
Rr520046 | regulatory region 520046 | 815 bp proximal | ||||||
Sim2 | single-minded family bHLH transcription factor 2 | Intron | ||||||
Tssr139539 | transcription start site region 139539 | 1935 bp downstream | ||||||
Tssr139540 | transcription start site region 139540 | 1619 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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