rs6365847 SNP Detail

Summary

• ID
  rs6365847
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112454686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGATGTA AGAGAATCAG
  CAATCCAAGA TCAGCCTCGG CTATATAGAA TACTCAAGGC TAACCTGGGC TACACGAGAA
  CTTGACTCTA AACAGGAAAC AAGCAAAAGA GAAGACTGTA GCATGCTTTG GGTCTTGAAG
  AATAGATTGA AGCCAAGACA CTGGCCTTCT TCCCTTGCTG GTCTCTCTAA TTTTGGGAAA
  S
  CAGCATGCCC AAAGAGTCAT GACATGCAAA GAGTGCCTAA TCCCAAGGCT CCTTGCCAAC
  ACGTGGTGGC GTTGCAAATG ACCTAGAGTG GCCCACTTTT CTTCAGAAGT GTCTTTTCCA
  GAAAGGAGTA TGTGACTAAG CTGACTCAGC CTCTGCCTGG ATTCACTGGG GAGGGAGGTT
  TAGTGACTCA CTTGTGTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8771958	WI_WGS_13_109909363	WI	MOUSE	f	SNP							C	G
ss52696790	NES15533101	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C			C	C	G	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6365847					SNP	C	C	C	C	C	C	C	G	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696790	NES15533101	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112454686 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Rr486335	regulatory region 486335	996 bp distal
Tssr121103	transcription start site region 121103	237 bp upstream
Tssr121104	transcription start site region 121104	264 bp upstream
Tssr121105	transcription start site region 121105	295 bp upstream