rs6365937 SNP Detail

Summary

• ID
  rs6365937
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23944937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTAGGTG GTTCAGTATT
  ACAGCGCTTT TTCAGGGAAT GTGGGCGGCC CTGAGAAGGG CCTTTGGTTA GAAAATACAA
  ATTAAAAAAG TCTTAGCCGC CGAATCCGTA GAGGGTGCGG CCCTGGCGCT TGAGCGCGTA
  GACCACGTCC ATGGCGGTGA CGGTCTTGCG CTTGGCGTGC TCCGTGTAGG TGACGGCGTC
  S
  CGGATCACGT TCTCCAGGAA CACCTTCAGC ACACCGCGGG TCTCCTCGTA GATGAGGCCG
  GAGATGCGCT TCACTCCCCC GCGCCGGGCC AGGCGGCGGA TGGCGGGCTT GGTGATGCCC
  TGGATGTTAT CGCGGAGAAC CTTACGGTGG CGCTTAGCGC CGCCTTTGCC CAGGCCTTTT
  CCTCCCTTGC CGCGACCCGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8772050	WI_WGS_13_23170271	WI	MOUSE	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6365937					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23944937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Gm61378	predicted gene, 61378	494 bp upstream
Gm61381	predicted gene, 61381	1637 bp downstream
H3c1	H3 clustered histone 1	931 bp downstream
H4c1	H4 clustered histone 1	within coordinates
Rr388132	regulatory region 388132	within coordinates
Rr475945	regulatory region 475945	266 bp proximal
Rr475946	regulatory region 475946	1422 bp proximal
Tssr121749	transcription start site region 121749	213 bp downstream
Tssr121750	transcription start site region 121750	255 bp downstream
Tssr121751	transcription start site region 121751	269 bp downstream
Tssr121752	transcription start site region 121752	1408 bp downstream
Tssr121753	transcription start site region 121753	1424 bp downstream