rs6366355 SNP Detail

Summary

• ID
  rs6366355
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:112454756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACGAGAA CTTGACTCTA
  AACAGGAAAC AAGCAAAAGA GAAGACTGTA GCATGCTTTG GGTCTTGAAG AATAGATTGA
  AGCCAAGACA CTGGCCTTCT TCCCTTGCTG GTCTCTCTAA TTTTGGGAAA CCAGCATGCC
  CAAAGAGTCA TGACATGCAA AGAGTGCCTA ATCCCAAGGC TCCTTGCCAA CACGTGGTGG
  Y
  GTTGCAAATG ACCTAGAGTG GCCCACTTTT CTTCAGAAGT GTCTTTTCCA GAAAGGAGTA
  TGTGACTAAG CTGACTCAGC CTCTGCCTGG ATTCACTGGG GAGGGAGGTT TAGTGACTCA
  CTTGTGTGGG TGACAATCTG GTCTTGTGGT ATTCTTTGAG TGAACGTACT CTACATATTA
  ACAGAGTGTC TGGTTCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8772471	WI_WGS_13_109909433	WI	MOUSE	f	SNP							C		T
ss52696789	NES15533102	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T		C	C	T	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6366355					SNP	C	C	C	C	C	C	C	T	T	C	C	T	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52696789	NES15533102	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:112454756 () rs orientation: forward

Symbol	Name	Function Class
Ankrd55	ankyrin repeat domain 55	within coordinates
Rr486335	regulatory region 486335	1066 bp distal
Tssr121103	transcription start site region 121103	167 bp upstream
Tssr121104	transcription start site region 121104	194 bp upstream
Tssr121105	transcription start site region 121105	225 bp upstream