rs6366511 SNP Detail

Summary

• ID
  rs6366511
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23945048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGTGCGGC CCTGGCGCTT
  GAGCGCGTAG ACCACGTCCA TGGCGGTGAC GGTCTTGCGC TTGGCGTGCT CCGTGTAGGT
  GACGGCGTCG CGGATCACGT TCTCCAGGAA CACCTTCAGC ACACCGCGGG TCTCCTCGTA
  GATGAGGCCG GAGATGCGCT TCACTCCCCC GCGCCGGGCC AGGCGGCGGA TGGCGGGCTT
  R
  GTGATGCCCT GGATGTTATC GCGGAGAACC TTACGGTGGC GCTTAGCGCC GCCTTTGCCC
  AGGCCTTTTC CTCCCTTGCC GCGACCCGAC ATGTCTTAGG AAGAATGGAA AATGGAGTCA
  GAGCTGAGAG TCGGTCCTTT ATATAGCTGC TTGGCCTTGA TCTCCCACCC CCAACAGAAT
  CACACAAACG AAAACCCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CZECHII/EiJ
ss8772627	WI_WGS_13_23170382	WI	MOUSE	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CZECHII/EiJ
rs6366511					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23945048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Gm61378	predicted gene, 61378	383 bp upstream
Gm61381	predicted gene, 61381	1526 bp downstream
H3c1	H3 clustered histone 1	820 bp downstream
H4c1	H4 clustered histone 1	within coordinates
Rr388132	regulatory region 388132	within coordinates
Rr475945	regulatory region 475945	155 bp proximal
Rr475946	regulatory region 475946	1311 bp proximal
Tssr121749	transcription start site region 121749	102 bp downstream
Tssr121750	transcription start site region 121750	144 bp downstream
Tssr121751	transcription start site region 121751	158 bp downstream
Tssr121752	transcription start site region 121752	1297 bp downstream
Tssr121753	transcription start site region 121753	1313 bp downstream