rs6367049 SNP Detail

Summary

• ID
  rs6367049
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23945135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCGGATCA CGTTCTCCAG
  GAACACCTTC AGCACACCGC GGGTCTCCTC GTAGATGAGG CCGGAGATGC GCTTCACTCC
  CCCGCGCCGG GCCAGGCGGC GGATGGCGGG CTTGGTGATG CCCTGGATGT TATCGCGGAG
  AACCTTACGG TGGCGCTTAG CGCCGCCTTT GCCCAGGCCT TTTCCTCCCT TGCCGCGACC
  M
  GACATGTCTT AGGAAGAATG GAAAATGGAG TCAGAGCTGA GAGTCGGTCC TTTATATAGC
  TGCTTGGCCT TGATCTCCCA CCCCCAACAG AATCACACAA ACGAAAACCC GCCCGCCGGA
  CGGTGACGTC ATAAACCCCG CCAATAAGAC CTGGCGGGAA AGAACCGAAA GCGCCCGGGC
  GGGAAAGTGA CGTCACAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8773165	WI_WGS_13_23170469	WI	MOUSE	f	SNP							C		A
ss47383873	NES11347442	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C		C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6367049					SNP	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47383873	NES11347442	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23945135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5376	CpG island 5376	within coordinates
Gm61378	predicted gene, 61378	296 bp upstream
Gm61381	predicted gene, 61381	1439 bp downstream
H3c1	H3 clustered histone 1	733 bp downstream
H4c1	H4 clustered histone 1	within coordinates
Rr388132	regulatory region 388132	within coordinates
Rr475945	regulatory region 475945	68 bp proximal
Rr475946	regulatory region 475946	1224 bp proximal
Tssr121749	transcription start site region 121749	15 bp downstream
Tssr121750	transcription start site region 121750	57 bp downstream
Tssr121751	transcription start site region 121751	71 bp downstream
Tssr121752	transcription start site region 121752	1210 bp downstream
Tssr121753	transcription start site region 121753	1226 bp downstream