rs6367227 SNP Detail

Summary

• ID
  rs6367227
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38532813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAAAGTG AATTAAACAA
  AATTGAGGTG GACTGGAACA CCACCACCAC CTCCCCAGTA ATAGGGATCA AACTCCAGGC
  TTTTCGTGTG CTAGGGAGCT CTGAACCACT AAACCCTTAG GCCTAGGACC AGGACCTAGA
  TTACATCCTA AAATTTGAAG TTTGACGTTT AGAAGGTTGT TCTAAGGCTA CTATGCTTTT
  W
  AAATTGTTTT GTTTGTTTGT TTCTTTTTTT TTTTTAAGAT TTATTTATTA TTTTACTTAA
  GTACACTGTA GCTGTCTTCA GATGCACCAG AAGGGGGTGT CAGATCTCAT TACAGGTGGT
  TGTGAGCCAC AATGTGGTTG CTGGGATTTG AACTCAGGAC CTTCAGAGCA GTCAGTGCTC
  TTACCCGCTG AGCCATCTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss8773343	WI_WGS_6_38748184	WI	MOUSE	f	SNP						T		A
ss51287223	NES13770183	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T		A		T	T	A	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs6367227					SNP	T	T	T	T	T	T	A	A	T	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51287223	NES13770183	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38532813 () rs orientation: forward

Symbol	Name	Function Class
Luc7l2	LUC7-like 2 (S. cerevisiae)	within coordinates
Tssr55661	transcription start site region 55661	1169 bp upstream