rs6367649 SNP Detail

Summary

• ID
  rs6367649
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  116
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:66136249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCATTTTT TCCTACTACC
  AAGTATTTCA AGTTCCAGAG TAGCAGACTA TCTTCTGTGA CTTAGAAAAC CTTGGAAGCC
  CTAAGACTTG TGGAACCAGC CCATAATAAA CTAATAAATA AAGGCATCTA CTATTCAGTG
  GCTGGCTTTT GTTTTGTGAA CTTTCCAGAA ATGATTACCC CACCAAGAGT CTCAGCCCAC
  R
  GAGAGCATCT CAAAAGAGCC CTAGGACCTT TTAGGTGGTC GAATTAAGAG GTTTGTGCCA
  AATCAACTTT ACTTCTCAAA AAGGAATTTC GAAGGCAAGG CTGTACTTGA AACCATGGCA
  CAGTGCACAC AAATAAAACT CGGTAGTTTT GTTGCAAGCT TTTATGCTAT GGACAGAGTC
  GATGAATGGG TTGCGTTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss8773765	WI_WGS_18_66342587	WI	MOUSE	f	SNP							G		A
ss63157211	NES17452169	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G		G		G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs6367649					SNP	G	G	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63157211	NES17452169	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:66136249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10156	CpG island 10156	248 bp distal
Lman1	lectin, mannose-binding, 1	543 bp upstream
Rr353056	regulatory region 353056	48 bp distal
Rr355117	regulatory region 355117	753 bp proximal
Rr405704	regulatory region 405704	330 bp downstream
Tssr153727	transcription start site region 153727	541 bp upstream